FastSTI
stable
  • Introduction
  • Installation
  • Getting started
  • Tutorial: Creating simulations
  • Interesting example
  • Running FastSTI from Python
  • Input file formats
  • Output file formats
  • Configuration file parameters
  • Events
  • Extending FastSTI
  • Help improve FastSTI
  • Bugs and other issues
  • References
  • License
  • Credits
FastSTI
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  • FastSTI: Simulations of sexually transmitted infections
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FastSTI: Simulations of sexually transmitted infectionsΒΆ

  • Introduction
  • Installation
    • Linux etc.
    • Mac
    • Windows
    • On all machines
  • Getting started
    • Simulations
    • Example
  • Tutorial: Creating simulations
    • Initial population
    • Agent behaviour
    • Reporting
  • Interesting example
  • Running FastSTI from Python
  • Input file formats
    • Configuration
    • Datasets
    • Agents
  • Output file formats
    • Results reports
    • Agent output
  • Configuration file parameters
    • after_events
    • age_alpha
    • age_beta
    • age_input_time_step
    • age_max
    • age_min
    • agents_input_file
    • agents_output_file
    • before_events
    • birth_event_every_n
    • birth_rate
    • csv_delimiter
    • dataset_birth_infect
    • dataset_birth_resistant
    • dataset_birth_treated
    • dataset_coinfect
    • dataset_gen_infect
    • dataset_gen_mating
    • dataset_gen_resistant
    • dataset_gen_sex
    • dataset_gen_sex_preferred
    • dataset_gen_treated
    • dataset_infect
    • dataset_infect_stage
    • dataset_mortality
    • dataset_rel_period
    • dataset_single_period
    • during_events
    • report_frequency
    • initial_infect_stage
    • match_k
    • mutual_csv_partners
    • num_agents
    • num_simulations
    • partnerships_file
  • Events
    • _read_agents
    • _generate_agents
    • _age
    • _death
    • _initial_mating
    • _initial_rel
    • _mating_pool
    • _breakup
    • _shuffle_living
    • _shuffle_mating
    • _rkpm
    • _breakup_and_pair
    • _generate_and_pair
    • _infect
    • _stage
    • _coinfect
    • _birth
    • _report
    • _write_results_csv_header
    • _write_agents_csv
    • _write_agents_csv_header
    • _write_living_agents_csv
    • _write_dead_agents_csv
    • _write_partnerships_csv_header
  • Extending FastSTI
  • Help improve FastSTI
  • Bugs and other issues
  • References
  • License
  • Credits
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© Copyright 2019, Nathan Geffen and Stefan Scholz Revision cc4be729.

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