FastSTI: Simulations of sexually transmitted infectionsΒΆ
- Introduction
- Installation
- Getting started
- Tutorial: Creating simulations
- Interesting example
- Running FastSTI from Python
- Input file formats
- Output file formats
- Configuration file parameters
- after_events
- age_alpha
- age_beta
- age_input_time_step
- age_max
- age_min
- agents_input_file
- agents_output_file
- before_events
- birth_event_every_n
- birth_rate
- csv_delimiter
- dataset_birth_infect
- dataset_birth_resistant
- dataset_birth_treated
- dataset_coinfect
- dataset_gen_infect
- dataset_gen_mating
- dataset_gen_resistant
- dataset_gen_sex
- dataset_gen_sex_preferred
- dataset_gen_treated
- dataset_infect
- dataset_infect_stage
- dataset_mortality
- dataset_rel_period
- dataset_single_period
- during_events
- report_frequency
- initial_infect_stage
- match_k
- mutual_csv_partners
- num_agents
- num_simulations
- partnerships_file
- Events
- _read_agents
- _generate_agents
- _age
- _death
- _initial_mating
- _initial_rel
- _mating_pool
- _breakup
- _shuffle_living
- _shuffle_mating
- _rkpm
- _breakup_and_pair
- _generate_and_pair
- _infect
- _stage
- _coinfect
- _birth
- _report
- _write_results_csv_header
- _write_agents_csv
- _write_agents_csv_header
- _write_living_agents_csv
- _write_dead_agents_csv
- _write_partnerships_csv_header
- Extending FastSTI
- Help improve FastSTI
- Bugs and other issues
- References
- License
- Credits